Scaffold Ga0115651_1044850

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115651_1044850

Scaffold Ga0115651_1044850

Overview

Basic Information
Taxon OID	3300008952 Open in IMG/M
Scaffold ID	Ga0115651_1044850 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3617
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	237
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005580	Metagenome	396	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115651_10448502	F005580	N/A	MKKGIPHPSVTGMASGLAIASYLNQGKTTTGAFGKTNIVEGVIKDVSDGQLATAFSTLSGNAVDLIGSDVGRKTLVGASLVAMAGAFARRQFPNLKLGGSKLYFRI*
Ga0115651_10448508	F005319	AGGA	MTDQVFAIIWILSFGLYFLIYTFWIPLKTQKRIEDWLRGSESDETLLLALEVVVRRIREQTLVDFEEFMLPQARENLQKFWSGAMGNVAKEMKKTEEGGQLNLMHSVASALQNESWYVQALGSKLLPMIAEATQKGEKPKPTLSEGMGLRK*

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