NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104259_1033852

Scaffold Ga0104259_1033852


Overview

Basic Information
Taxon OID3300008958 Open in IMG/M
Scaffold IDGa0104259_1033852 Open in IMG/M
Source Dataset NameMarine microbial communities from eastern North Pacific Ocean - P1 particle-associated
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Nameeastern North Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009426Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0104259_10338522F009426N/AKKVKLKNANFSTATKVNKNVKLLLNMTFSEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*
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