NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102887_1004424

Scaffold Ga0102887_1004424


Overview

Basic Information
Taxon OID3300008961 Open in IMG/M
Scaffold IDGa0102887_1004424 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1550B-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5779
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2328Long. (o)-123.878Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080085Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0102887_10044244F080085N/AMALPLCAQEVERPQTTFKADSIQLDSNGIRMFGEEVEMTLSPDVKVKFEPKSKPSKQEKVYRFEGQTVSFGFYPGFYSGANFSGAEGFNNPTSSWGDGQVDYVNRTSYEWFYVQERWKESPIWGHLGLAWDFIGVEFNPNAYLSTTFLDGVPNGLAVLQAPATSEMEVFWRRSQFLINYLTLNSNFVFNASRSGRKGLSLSVGNSMSLRMGKPTMYRDYYITGLGRVNDRVSSNFYAMRWAYGVQARLGFNNFFIEARKSATPVFTSEAQMPVAFLGAIGFGYSVKW*
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