NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104242_1004204

Scaffold Ga0104242_1004204


Overview

Basic Information
Taxon OID3300008962 Open in IMG/M
Scaffold IDGa0104242_1004204 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2688
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameLake Lanier in Georgia, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F001460Metagenome / Metatranscriptome690Y
F060900Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0104242_10042041F060900N/ASQKRVTTLLSQIDAVKEIICEAYADSQDQDTLREIAEALGIELIKEVQFTASVEVSGTYSYDILSDYSDYDLDSVITDALFADSNDGNVQVDDTEVCNVREA*
Ga0104242_10042043F001043GGAGVSDYKDGFDDGYKFAREEMMEKLSEIDILDIDSWILDRLCEMIEGGKL*
Ga0104242_10042045F001125AGGCGGMGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARSRWTDESYATRICVSQIVGEDWKAETGWGLSVNRILDNEHKVPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLVMV*
Ga0104242_10042048F001460GAGGMLGYTENDLNRMINAVHDAKLFYLRYPSDLMDKTELRNDLEMAVSFMQG
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