Scaffold Ga0104242_1007320

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104242_1007320

Scaffold Ga0104242_1007320

Overview

Basic Information
Taxon OID	3300008962 Open in IMG/M
Scaffold ID	Ga0104242_1007320 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1981
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	Lake Lanier in Georgia, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004132	Metagenome / Metatranscriptome	451	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10073202	F004132	GAG	MTQEQLSVPYNPNLLVTYKSIPGTYAAPESPTFMTDKVTEIEWDLHNGRAAVDELSRKRLDIAWLEDQVGEWYDPNYTKDEVLQAIIERFGFNPTKEIQVYGTVNFSGTISIPYSEVEDFDLSNVTIDAELSSYEYEADLIVDEVSLEEN*

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