NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104258_1026335

Scaffold Ga0104258_1026335


Overview

Basic Information
Taxon OID3300008993 Open in IMG/M
Scaffold IDGa0104258_1026335 Open in IMG/M
Source Dataset NameMarine microbial communities from eastern North Pacific Ocean - P1 free-living
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1088
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Nameeastern North Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010543Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0104258_10263352F010543N/ALIMKFAVAALLGCVSAISLKNEKKDSDDCPTSQQVFSYNEKVGTATGFLQLSACSASGISGAGLTCIPDHQLFATGMNGDEDLGQDIIMKGKPFHYNQKSQALFATGMNGDEDLGQDIIMKGKPFHYNQAPANATLFATGMNGDEDLGQDIIMKGKPFHYNQAPANATLFATGMNGDEDLGQDIIMKGKPFHYNQQKSQALFATGMNGDEDLGQDIIMKGKPFHYNQQPQALFATGMNGDEDLGQDIIMKGKPFHYNQAPANSKLFATGMNGDEDLGQDIIMKGKPFHYNQN*
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