NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102831_1100053

Scaffold Ga0102831_1100053


Overview

Basic Information
Taxon OID3300008996 Open in IMG/M
Scaffold IDGa0102831_1100053 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)966
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090400Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0102831_11000532F090400N/ANNLFKNINRSDYVKRYEVIEATEDILALSVTWKRLRDIKNEGGSLNASVTTLLDDHLFRKIEESDRIRANEIRDYFSKKIMLWTLKSVKLSAYRQDLNKFIHGDGKKVTEELLPLIYRLPEFYEYDVQFDQFKREVNLEITNFSNIESVKKNTTLTPITSFYKTNKRVKHFEYWLKDSNDNAHLITIEPKNPLKHIWDKIFTNGQIRIEGTYYPKKHDELQYYQLLNWSAT*

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