Scaffold Ga0102960_1016438

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102960_1016438

Scaffold Ga0102960_1016438

Overview

Basic Information
Taxon OID	3300009000 Open in IMG/M
Scaffold ID	Ga0102960_1016438 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2782
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4972	Long. (^o)	-122.1293	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046985	Metagenome	150	N
F066266	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102960_10164381	F066266	AGGAG	MSILNEHELEKKIVSTIKYRIQEALAYRTYDRKTNKSCHQDYRKTIRDAKDFDELKRIMSEFVDDLMHI*
Ga0102960_10164387	F046985	AGGAG	MSSLLKLYNESWSKEFDVDVDASKSIKVHVAPKTYAMLVQIGVFNIHSKGIHDDVRKVNVKAIDINTDFSVDMLLNNYEAMKMAEILNEYPFERGYQQQADKIWYNILKHLNEFNPKDAEHLRNKLFKRRVA*

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