Scaffold Ga0102960_1117413

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102960_1117413

Scaffold Ga0102960_1117413

Overview

Basic Information
Taxon OID	3300009000 Open in IMG/M
Scaffold ID	Ga0102960_1117413 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	964
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4972	Long. (^o)	-122.1293	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048962	Metagenome	147	N
F091641	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102960_11174132	F048962	AGG	VGSKKSDLGGQEIVEISGKYYRLPDFEEVYIEIPKVEKGEDAYKRVRRRHADIFDYYYNNHLLYPDNHDLNNDLYNAGLRLQQDIYYAGYYPKVTFDYMKEKIIGDKDKTIISKLGAQDRVKGALQKAGDSASIIYEVIVNNNSAKHKMKKFRQGLFRLCDYYEI*
Ga0102960_11174133	F091641	N/A	MSKELYKEIITQHFLDALGISTHPFYKNRFGSNKDKIEAKKWLKRHNQDFQFICQMAGLVPSYVLKKYKFLQINKRKINKLIKSYISRLDNYEKQREVIR

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