Scaffold Ga0102963_1021441

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0102963_1021441

Scaffold Ga0102963_1021441

Overview

Basic Information
Taxon OID	3300009001 Open in IMG/M
Scaffold ID	Ga0102963_1021441 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2722
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4973	Long. (^o)	-122.1295	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093806	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102963_10214412	F093806	N/A	MFEVRWIQNESTVIRRQLPEVLGCSEFAVSMAIKDLLYCIAYNEDSQLCNLDFFQPLHLEVRFEYWAESVIYSSLHQKTIFNQGSFVVGADVHSFYGFYTAHQVLFESKRFKERKMFRDGGPLYELFYWRFISDQGIQVNMLFDREYCFRSYIGSFIEVKDNPNEYLDLQEALRSSITTKRFYVEQSQFYNVLASPIVGMLAYSKKHSCCAICDTKVELGSEYGYCLNCAKELLLPFSEKTIGPIDYDGLRKSKLIDKNDFYSGNDYEYWITPNGELGYRDTNLPF*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.