NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100377_1057125

Scaffold Ga0100377_1057125


Overview

Basic Information
Taxon OID3300009004 Open in IMG/M
Scaffold IDGa0100377_1057125 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1926
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042954Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0100377_10571251F042954N/ATMEDVQTRNGLYGFDFREVDQRRVTEGEEKKTYNIKSLWQRSHEIINLAARGYKGTDIAEILGITPACVSLTLNSDLGQKKLSEIRLVRDEDAKKTSEKIRVLTAKAIQTYHEIFDNESGEATLRDRKDVADTVLLELSGLRAPTKIHTSSVSTVLTAEEIESFKSRGLRAARETGFIDITEKPDEKCSSDVEINSNLSIEESNNESIEATA*
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