NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0103710_10011504

Scaffold Ga0103710_10011504


Overview

Basic Information
Taxon OID3300009006 Open in IMG/M
Scaffold IDGa0103710_10011504 Open in IMG/M
Source Dataset NameEukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_E2
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterWoods Hole Oceanographic Institution
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1671
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058162Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0103710_100115041F058162N/AASLHRRKVASQLWRLVRTTMVVIRVGFICGKDTDFVEHPGKGPRYASIGDASFLSDLPDKWRVDPNSKEYLMDCEPGTKGQAHCDVALAWYIKKNYQDIEVDIITPEELTVKRLHSNDLNFTMGYNAVNIKVENNASGAAKMRAFTKAKNIYPTWEAEEYILHKSKYMQACMDAGVPMAPTIFAIKGKRSPAQLMAQIKERGWKTFVMKQSESGFSLGFCKMTVEQCDNDPSILATYFKDWSHCPEFIVQEAVEGFTRNWETRCFWFNGKFLYAIANMAAVSAKDSKERIVTGNDIPKEFLENAKRIGQQAIRVLPELQTGGAPVKNVLVRTDVGCSDSQLHDKYTNWDPSKRTFFLNEIEPSSTTYFVRWLKFDCIPMYAKLYVEKAREIYKATKGEQIRKVPTPARSTPVKGKTKPPVSTPVKAKTKVAVSAKVLKTGKLKAKK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.