Scaffold Ga0105105_10399838

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105105_10399838

Scaffold Ga0105105_10399838

Overview

Basic Information
Taxon OID	3300009009 Open in IMG/M
Scaffold ID	Ga0105105_10399838 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	766
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0991	Long. (^o)	-99.1044	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033024	Metagenome / Metatranscriptome	178	Y
F060837	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105105_103998381	F033024	N/A	VAPQRPEMPIPPQPQAQGNPVEFWNSFGSVAERDPANAWRYLNMASPDAFRQKLLVME*
Ga0105105_103998382	F060837	GAG	MAFKKTSARDRADQFLAAIGTAGGPVGAPGLVAFGAGDIARQIQSGNMDEYAAIRAMNGGPVVGDPNAPQPRMPQDLDAAYLKLNLPGSPLPRNGLLSPQFQQAAESIQNQLINQEQYAMIPMMPQTGQLPMGIQPPMPQKKGGR*

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