NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100005881

Scaffold Ga0066710_100005881


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100005881 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11322
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010022Metagenome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_10000588117F010022GGAMLSSGTVMRKNILVVGFAMLALALLFGVSYPPAFLFVVLFGIPISILNTILGLITRTPPGLEFQPESAKIRLIIDRGVVRASIYQLVFLNSKLILKRLTSVMVTVILALVLAVVGFEVLGIVGALMGGVTGFSLQEFLTQRMRNKIGTEMQLTSLGKNDIEIEYNDLLEVRLVKSRLHLISENGSLTANLPRGYVGKIKPMLADLFETKFTTEESFRAAEAAEKENEKRQHPGSDRGKFSRR
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Institute for Fundamental Biomedical Research
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