NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100007167

Scaffold Ga0066710_100007167


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100007167 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10594
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000195Metagenome / Metatranscriptome1659Y
F001972Metagenome / Metatranscriptome609Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1000071677F001972GGAGGMKALTRSTLLAIPLALVILLMLPRHGTFLWDFLDAFTLAFSFTYVGHWVEVLLLKIPGIETSGGKIVRVLGWFAGGLWCYVLARWALLAYGRSTSELPGLIWGGLFFVGLEFVIHGLLQASGKPNFYSGQLVESETTAAR
Ga0066710_1000071679F000195N/AMDLTVTSQQYDAVRNAKHLPDVLKNVLDTASKNASGHVLHLTYEEATALNELATWNVHTDTDGNVTPESQLFDDLVRAILTHPEY
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Institute for Fundamental Biomedical Research
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