NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100017120

Scaffold Ga0066710_100017120


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100017120 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7805
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058060Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1000171203F058060N/AMQRHDFRTPAAANELYLLASPVDARFPICILDNVQYSRKTVIRLQVALLFLFITLSCSTINHIQDDICNCLAALPDTSDYRHVAKHVPIPSGTPQEIDVATILSWPQDPIPLPFDAPRTGRELQLVHVANAFLENASVNQGDCDIHLEISQTADKNAPRVIIETPIDSEYCTSRKTIQSQLKQHGFQLDLQHGGDLPQPLAVDVLGLPFEDFEHGRGGSQVATLWEIHPAMATIK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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