NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100026237

Scaffold Ga0066710_100026237


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100026237 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6642
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005811Metagenome / Metatranscriptome389N
F021503Metagenome218Y
F042270Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1000262373F021503AGGMKRLLEKHNARETYDKLAARIILANERTRDGGRGSRVQTETRRITITERDLQEINTGRFGRIQLPSEEEARCWLQQWREGAKPKEGTPIRTVVVRRNRKEVRE
Ga0066710_1000262374F042270GAGGMTKNKIQEGPLPPPDKGANDARPGLPTPTVRKNVTWVQPEPTTSDVTRPHQLSPDTTWAEPSVAKSKLAKGSPGLSTTRDQTNE
Ga0066710_1000262377F005811GGAGGMIRPENRRQWIPGTAELTLAAGLAATYIITTFIPLTPFIGGPGFITLEIIMLPIIAALLRPMPALTTVFVGSLGMALGQPSFYQVFGLPGLLIPLVAVGAGSVAFHYRLGPIVPWAYVLAGAIYYIALSNGGTLFWLVPYFLVIVSLPLAFRLKNNPRIGLLTFYIAMTEQVSLNILSISILSLTGPVWSVITPLMYAERTIATLGGAAGIVALKSGLGGRLDLTDQLPREVRR
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