NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100131350

Scaffold Ga0066710_100131350


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100131350 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3438
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004042Metagenome / Metatranscriptome456Y
F040290Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1001313503F000092GAGVKQHLGRQSGVQKVDVNLIDGKVEVTPTEGGQIDPAQLLKATYDSGVTGAEMDVSARGEIVKDSSGGLALQVAPNRSFVLTPNELSKGLETLADTQTMVTVGGQLFKKPAGKKKADPSAPLKLLVLEVQKKE
Ga0066710_1001313504F004042AGGAGMNTKKLALLALLGSMVVPVSQAQIKHIEMRVEGMT
Ga0066710_1001313506F040290GAGMLLALLVVALAAYAFNCGAATTPEQAMQCCNSMSCSSHGHHAQDCCKTMQAIHAPFVQPASVKGVSYCFVALGVVPAAGKFLGLDSPDPVITAHCHAPPIRYIPAPRPLRI
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