NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100361868

Scaffold Ga0066710_100361868


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100361868 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2149
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001875Metagenome / Metatranscriptome623Y
F026513Metagenome / Metatranscriptome197Y
F077484Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1003618683F077484AGGAGMPEHWSFFHLTAARPVPSDDSPLATLTPDEFDACVVEGHPLFQALVETVNAYSETHPDLSLMACYIAADMLRELLKQDLRDAEADA
Ga0066710_1003618685F001875GGAGMTEQNQARDLVATLRDALHQLESTLEHTRDGVDAIASQAERIRDSVAALGDLRQREDTSVGIEMFVDAAVDVLDAFRELESGILDVQAEVDTLAEEIADEESRDT
Ga0066710_1003618686F026513GGAGGMLTPARKSPDERGQRWLQAEVQQLLADSGVALATPGPEDTPACYWGTGPETETTLYLRMAGDPEPKALHFPLTMIAQCGSGLYPAQHNAIMFIRRTLRKMGLLSA
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