NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_101917376

Scaffold Ga0066710_101917376


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_101917376 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)886
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011609Metagenome289Y
F063126Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1019173762F011609GAGGVSVALALLGGACGRVPERVGRVRALVAPPHRDTIRFEAPARATRCGGGTGRGGLLLQGSSKGNGVVVWLRATGGGADSLARGTWPLLQRGDTVSPRGATVGVRYMFHEVAHGLSLDSGTVDVRETARAFTVVARGSGHETMAAGRVALAASFDAVALEPDTASCQARL
Ga0066710_1019173763F063126N/ALGAAGWMVLVCVDRKGLKPQPLPPGLVEALAPHTLTTAAVRAILGLTTPPGARASP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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