NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_102139009

Scaffold Ga0066710_102139009


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_102139009 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)820
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012223Metagenome / Metatranscriptome282Y
F019913Metagenome / Metatranscriptome227Y
F090360Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1021390091F012223N/AHFHEVESHAGIALLVEEEDYYTPEWALEEEESADGHAPR
Ga0066710_1021390092F019913AGGAGGMAMPRGDSPQKAQEFYNYLLAHHETEHPVKTWHVNWLSLAWMWGFVAALSLILILWIWQYRTTRQKPRIYAVDTWSGFTSELAGPATLFFLIFTAILTGFAVALIVGHLVNGQTF
Ga0066710_1021390093F090360N/AMAAAPPFVAYSTMSEAVVPASEWPYLYASLQAYKAHVQEYPGCQKMELFAAVDDDGGMRIQCYTVWDTPEQLDAFLEIGYTFERLLTDLELTEVERSLVMEKLF
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