Scaffold Ga0102811_1025282

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102811_1025282

Scaffold Ga0102811_1025282

Overview

Basic Information
Taxon OID	3300009024 Open in IMG/M
Scaffold ID	Ga0102811_1025282 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2286
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102811_10252826	F001872	N/A	VAVAKAKAGVPNARDYIGNADGPSAGPRAGMNEFIKQVTAASNGAFVNLGSWGQRDVKGKPGTLSVHATGRAWDAGFTTSEKHPNATRKNALAFIDQMIANANDLGIQMVIDYFPKEFGRAWRCDRQAWKNYDTKTVSGAPGGRWFHIEISPQAADSVIW

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