NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102811_1069555

Scaffold Ga0102811_1069555


Overview

Basic Information
Taxon OID3300009024 Open in IMG/M
Scaffold IDGa0102811_1069555 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1322
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024584Metagenome205N
F050674Metagenome145N
F087764Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0102811_10695551F024584GAGGMYFKLVSKNGYRDLVRNARRICVSQLSEEEKSAAFVELYGILKDKLFESTRSLNVEAAYADRCIHWNQNDLSQIKPMTNMRNPWLRFKREFEQCLDGKMPSKNIEIALAWFYASPYRDDWIAS*
Ga0102811_10695552F050674AGAAGGMDRIVNPLNAIGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHEEYDSAVRRINAHWSMLPRFRHHNPDEFWKRDKVSYPPMYLELMVDDSDW*
Ga0102811_10695553F087764AGGAMKRPTISEAKTFFYQNAPFVMDEYEDMKQDYGEFFAARYIIEILIDYNKNEKEASNG*
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