NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103707_10002061

Scaffold Ga0103707_10002061


Overview

Basic Information
Taxon OID3300009025 Open in IMG/M
Scaffold IDGa0103707_10002061 Open in IMG/M
Source Dataset NameEukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S2
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterWoods Hole Oceanographic Institution
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1879
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004202Metatranscriptome448Y

Sequences

Protein IDFamilyRBSSequence
Ga0103707_100020611F004202N/AKQFMRIRDEFYNIVKNLERQEVRDWLQNTKEILNEEKKMALSLGDDHHKKNTTDDKLEKIFTRFESLMPRVNETKLVTDMLWKSYEYTDDLVPLMEFTTEQFGQATREVFSGSVSQTEDIIDKHTKVMDKLEKKKKDVREIIGRGEKLAEMAKAPQFLGEKLAAMKKLWNDANNEAKQRLDDLKNNAGCWNAFAEKCALLQTQVSNCQKQIDDVKKLYDIAKAKEDHTERVNKASSIKADIAKTLDGVLDANNVLQVLADDDTKVQLNQEVDDLKTACDVSKAIDEKLVWLDNFNKSIIDYDKICKELEEIVVKDRKDLDALIKPDGAFKATDRLVSAMDLADDIRGQIEIANNKQQLWDQGLSPEGKENTAEAKEFVRRMTEVSTKLAALEKESDGEAAKYGQDIVLVAAFNNAQKGFASWIDGAEAKCKTGYGSPNSLEEATKMLDDCKAWRESTASVCASLETGKASADKMTLHGEQDKLYTEMKARWVEVDKSCKEWSVKLDELSGMWTKQTEMLNKVTSTMVAGEGEGKGEQVNLNELDAQMEQIKDMFVKKQEMMKKMSTTTAPNPAELTA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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