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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009026 Open in IMG/M |
| Scaffold ID | Ga0102829_1013021 Open in IMG/M |
| Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2310 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas → Armatimonas rosea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.2 | Long. (o) | -123.94 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045757 | Metagenome / Metatranscriptome | 152 | N |
| F082697 | Metagenome / Metatranscriptome | 113 | N |
| F088907 | Metagenome | 109 | N |
| F093860 | Metagenome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102829_10130211 | F093860 | N/A | MAKHIVFQPVDLESDDSIKDTVLWGASFQIHPEIEPTLPKEMLALVSNKSSISYPLAYWNNEFSKLGFELDIDFPYCKEFVWDFILPDAVRITIKAKDINTNYNQIIIPKPLAKKLLDEMNLPLFGKMHPEKFHKKLIAYIDISQDTYDMEEKIFEVLTELEDLCSECVSYES |
| Ga0102829_10130212 | F088907 | GGAGG | MSHFYRQKSYTYNESDEMLTEIKKEMSNFISKEEAELILNRRNAMVDPPPYRMNDEIGVLHKEIDDLRREIYFLRTHLNKIQIKFDIDEPTL* |
| Ga0102829_10130214 | F045757 | AGGA | MKKVFAILGLFLFLNFIAFAHQEEKKKEPTFTVISTKYVLTSTIIDDFFRAAKITTYSYNKEEINKIKILKFQIWEKNFDDTKYLLEKFLSVQFETDEKKTYYMVKKK* |
| Ga0102829_10130215 | F082697 | N/A | MDLNNLDDEQMLELQKKFEENRNIILSMDPEEFLERIIKLHDSTDVILEGYDLSTDISGGQGISMAGIIRLRNALMDAVEWITNNLTEEDLEEEL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |