Scaffold Ga0102829_1031785

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102829_1031785

Scaffold Ga0102829_1031785

Overview

Basic Information
Taxon OID	3300009026 Open in IMG/M
Scaffold ID	Ga0102829_1031785 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1542
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F020906	Metagenome	221	Y
F085231	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_10317851	F003067	N/A	MTAAQSLLAIAIGICTLMGFAAGLVRHLVKYYLAELRPDNNGGHNLRGRVDRIEAKVDSIYEMLLQR*
Ga0102829_10317852	F085231	AGGAG	MKEQAIAAGLSYLRAAVSCAAALYMSGITDPKTLANAFVAGLLGPLLRAMNPSDKTFGTK
Ga0102829_10317853	F020906	AGGA	MPTSAQITVTTTATLLVAANIMDQTVLLHNLGGGSVYLGDANVTSANGYKLDNGDKLQVPVGDHEGLYGIAASGTHTIAVLKQVN*

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