NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102829_1165757

Scaffold Ga0102829_1165757


Overview

Basic Information
Taxon OID3300009026 Open in IMG/M
Scaffold IDGa0102829_1165757 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015095Metagenome / Metatranscriptome257Y
F023592Metagenome / Metatranscriptome209Y
F060716Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0102829_11657571F060716N/AASVAALYMSGITDYKVLANAFIAGLIGPLLKALQPSEKQLGVGAK*
Ga0102829_11657572F015095AGGMEQAQLVVGIALGSFTILGLRAGLIRHFVKFYLAELKPDGNGGHNLAGRVERIEKKVDRIYEILIEDRLAR*
Ga0102829_11657573F023592N/ALIGLNKGQIMNSLDILIGLGACALGFLFMTVGYSIGFKHGHGEGFVRGRAIAKALKESELSA*
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