Scaffold Ga0102957_1000089

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102957_1000089

Scaffold Ga0102957_1000089

Overview

Basic Information
Taxon OID	3300009027 Open in IMG/M
Scaffold ID	Ga0102957_1000089 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22896
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (65.79%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4971	Long. (^o)	-122.129	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046976	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102957_100008938	F046976	GGAG	MGLDRIKDGTARWYVVNTQNLEEYGTNFHKFKGGSEYVVGFHVDKLVYEEDAFGEGEHSYYNSPSLTEASVAALVMKHVNRLNGLSGSFDYITNIEVIDSPFNTPDYPTWRGSAEDLIEEIEDLREYNKNMV

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