 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009034 Open in IMG/M |
| Scaffold ID | Ga0115863_1061001 Open in IMG/M |
| Source Dataset Name | Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Macrogen |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4804 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal → Subsurface Anoxic Archaea In Intertidal Mud Flat Sediment |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Garolim Bay, Chungcheongnam-do, Korea | |||||||
| Coordinates | Lat. (o) | 36.88 | Long. (o) | 126.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F075043 | Metagenome / Metatranscriptome | 119 | Y |
| F092306 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0115863_10610013 | F092306 | AGGGGG | MTMPATFYDGSDWEQSSEPQVFVSVQEGDCWPVDVRSESTTKDQLDDGLHPFVAVGEYAAPTRPLNLVGVVTSVNLSALGTATDRVVLNIAHGSIYRQYVSNILTYSGGAPNTFETTPQVGQPVYIDDSADLSEGVTLSMSPLNWNDVENPLAGVLWYCQDEIADGQVGGARATSTFDTVLADEAVEQIYCVMLVAGFRELA* |
| Ga0115863_10610014 | F075043 | N/A | MEGIRMDQLSDMGASPQQMQEVRDKFAFLDGELSGVHSTGASQRLREVMISADFTYALEEFVQRKMWSEYQQQTFAFEPLVTPDTLPNYLPVTRYLDQAGVDDLEYIGEKAQPRPGYVTDATKRQWQVYIWAKQYDFSHQALVNDDLGYFNNVTSKMGRAARRTLEKFVSRMYTNATSIARLTGLGALYSTTGRLTTARISTARMAFNQRVDLRNERVQVGLRHIVYHTGLSDVVATIQNSTLVPELATNAANVVRATFNAIEDPYIVGTAPNLPWWAFADTSALKTMVLARLAGMPGPIIARKRSDVESVTSILGAGTPVAPIMGDFATMNIVLKVLDVWGTYIDGTEGNLVDYRGAYYSAGTAP* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |