Scaffold Ga0099829

Basic Information
Taxon OID	3300009038 Open in IMG/M
Scaffold ID	Ga0099829_10000121 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37836
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (44.19%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

37836

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (44.19%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002514	Metagenome / Metatranscriptome	552	Y
F005811	Metagenome / Metatranscriptome	389	N
F008234	Metagenome	336	Y
F020515	Metagenome	223	Y
F042817	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_1000012114	F042817	GGA	VVNQSVTSALAAEALVAPMKCIVVDAAKALTAAVAEFRRPLSATVARRHCLVERAEPTSLHLFTSLSLQALMSTMLMGWTAQSGRLMRWVWMSTRSSVRIRMGRTRVMLWIGVRVTLGLRLRFHVDSSRKKSRPVIVYF*
Ga0099829_1000012116	F005811	GGAGG	MIRPENRRQWVPKTAELTLAAGLAATYIITTFIPLTPFIGGPGFITLEIVMLPIIAALLRPIAALATVFIGSLGMALGQPSFYQVFGLPGLLIPLVAVGGGSIAFHYRLGAIVPWAYVLAGAVYYVALSKGGTLFWLVPYLLVIISLPAAFRLKNNARIGLLTFYIAMTEQVTLNILSISILSLTGPVWSVITPLMYLERSIATLGGAAGIVALKSGLGGRLDLIERSPREVRQ*
Ga0099829_1000012122	F020515	AGG	MTVATMQKDVRPCEALCPKHGVKCKLKMFEQDAYPMHAHLIDQKMCVWKK*
Ga0099829_1000012123	F002514	GAG	MNLLDQLELYTLDDARKETSQIDYWLFVYKSMKSGLLMTKNMEKHLRFKLKGLGVQV*
Ga0099829_1000012142	F008234	N/A	MTELYLSFLLMYHGALTMLLGAYGVLPPYFGTSRLLANIVGLDLNSHPNPLVTASFGLPFYLGFLSIGLITTSLIVNGFVERRKTRERRGVGAIFTNDS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099829_10000121

Overview

Ecosystem & Geography

Associated Families

Sequences