NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099829_10000839

Scaffold Ga0099829_10000839


Overview

Basic Information
Taxon OID3300009038 Open in IMG/M
Scaffold IDGa0099829_10000839 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16419
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (65.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011573Metagenome289Y
F036188Metagenome / Metatranscriptome170Y
F040019Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0099829_1000083918F011573N/AMEQELAIKLQADGIRYQTQVEIPVTTADFYFSLESRPLLVFVDGRVHLGVVQMAKDDELRSLLRKKGVQNPRIILR*
Ga0099829_1000083924F040019N/AMSFQVLFHERDVAGFCAECNLRLRTDKTIGRRTPEYYTEFTRQVEASYPDRIQRIFLKMNSVSEAKRVYPVVRRLGYRTKQSSPMLHARLVMVETTRDQAVALVEKLRDQGMQVALQNDLHSPPP*
Ga0099829_100008398F036188AGGLVQDRRRLGERISPHLLREARLRERDGDWLGSAKAVVLRRYRGKYVAVRNKRVLAASATMKGLYAKIDMLNPGMVLIARVERPALQVYS*
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