NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099829_10027326

Scaffold Ga0099829_10027326


Overview

Basic Information
Taxon OID3300009038 Open in IMG/M
Scaffold IDGa0099829_10027326 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4018
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008095Metagenome / Metatranscriptome339Y
F010830Metagenome / Metatranscriptome298Y
F025269Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0099829_100273262F008095GGAGMDKSRDQDRGKGAMEQDQQNQGGNTSMQGQLGHRDKDAELKNADADLSG*
Ga0099829_100273264F010830GAGMIRKILHAAFLVALLNPAWGKATTELPLVRQPSTVFIVGPGTVLSVHLLDLPFIEPHFAVKYKIDGGELIEVWHPGKDIPVLEGMHGMLTYSTHPEMILNFRVVAQNLTK*
Ga0099829_100273268F025269AGGAGGMPQVLAFYSINEAAKPANQRVHHNNSACPPGRDIPQNEMRMGTGNYRLCEDCNRLNARTS
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