Scaffold Ga0099829_10284397

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0099829_10284397

Scaffold Ga0099829_10284397

Overview

Basic Information
Taxon OID	3300009038 Open in IMG/M
Scaffold ID	Ga0099829_10284397 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1354
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004877	Metagenome / Metatranscriptome	420	Y
F024640	Metagenome / Metatranscriptome	205	Y
F079369	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_102843972	F079369	GGA	MPRKDRPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
Ga0099829_102843973	F024640	AGG	MKQKSELEIGLKVGDRVRLIAQTLPWRAEMTLQGQIGEVIERRDDGRLTIRFDNGRLLMGRDAEAFERVLDQGQKPPLRL*
Ga0099829_102843974	F004877	N/A	MGVVHRGQKFVEVGSGRIGYAMTATALSEVSNGAKWNPDPSFNVAAAILADPEFASVLKVVLRDGHVMVPALKAKGK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.