Scaffold Ga0105152_10010641

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105152_10010641

Scaffold Ga0105152_10010641

Overview

Basic Information
Taxon OID	3300009039 Open in IMG/M
Scaffold ID	Ga0105152_10010641 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3522
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Russia: Lake Baikal
Coordinates	Lat. (^o)	53.7598	Long. (^o)	107.9791	Alt. (m)		Depth (m)	0 to .05
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040696	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105152_100106414	F040696	N/A	GALPTVDMDHHAAAIDIGDFEVETFMESQAAGIDGGKIGVILEGFDLGKNASDFFTAQNGRKASFGLGSEDSENVPISLEDMFVEEAYAAIADAHGIGGPVINVLSVEEIVLEFLLGDQIGRFAIELAEHANGACVGLLSSFPFAIELKSLDRSVIPLCLHDTSPFSIRMNFPFQ*

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