NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105152_10016262

Scaffold Ga0105152_10016262


Overview

Basic Information
Taxon OID3300009039 Open in IMG/M
Scaffold IDGa0105152_10016262 Open in IMG/M
Source Dataset NameLake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2890
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRussia: Lake Baikal
CoordinatesLat. (o)53.7598Long. (o)107.9791Alt. (m)Depth (m)0 to .05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056343Metagenome / Metatranscriptome137N
F098715Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0105152_100162621F056343AGGAGMPEQITDHQVLGSYLAEEQVNGFTVKPWTIKQLILVMPILDALVQEFKNQGVTLDNLGEMFESQGLAAAKDIIQTILPRLPEFLSITLRIDREQAEELDLGLGMQLAVKVLRMN
Ga0105152_100162623F098715AGGTGGMADSIKVQAMQKLAGVFGAVASIGSVHRWQGSPTDLDRVKLPALFFWDEDETRDKRNRLAMGTLKLYVAVFCRLSPSGAALFNDVADNLQGTIHNALLGTSELKGLVENLQEERVWKEFPNDQYGVLFMSFTLTYAHAWGDAFSTTY*
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