NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102892_1042822

Scaffold Ga0102892_1042822


Overview

Basic Information
Taxon OID3300009057 Open in IMG/M
Scaffold IDGa0102892_1042822 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1553A-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)850
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.1867Long. (o)-123.8835Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030251Metagenome186N
F046022Metagenome152N
F077805Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0102892_10428221F046022AGGAMKVNRQILTARALQNIQVKTAPQRAVDPVEKSTKIRSWKEIFDAQLKGESDA*
Ga0102892_10428222F030251N/AMVMLVTDSFPPVKEVTFPAQQREFTLVKRTPFIGTPLWIIFERDGEAEPQQVARFTDFDLACDCFDSLVQDAKNES*
Ga0102892_10428223F077805N/ALTGCRFSGYGDYRKGENKMFKVSYSIRVRQNVVPCEVTFATRKMAETFSGITYGSKIERVYTDGELFDLWSQGQIDVGAW*
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