Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000093 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10000093 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	55569
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (19.05%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

55569

Total Scaffold Genes

84 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (19.05%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F020649	Metagenome / Metatranscriptome	222	Y
F034466	Metagenome / Metatranscriptome	174	Y
F038565	Metagenome / Metatranscriptome	165	Y
F047507	Metagenome / Metatranscriptome	149	N
F050171	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100000932	F038565	N/A	VTNKKKFNFPESLLKQIDECSFGGYIMFNFSSKGEPQVYTKFDNQINAMALLYYVNTWSQSVDQLNLEATTDQIAKKNLEEDDFDDSEEDRD*
Ga0114973_1000009336	F020649	N/A	MAIKIKNWWGNLKTYDKFFFITFIPAILFTLWGLSDLYINYFDLLSKEDHLQFFLRVFFPISIATFITVLEHNKRKKLIKDIKTYLND*
Ga0114973_1000009339	F034466	N/A	MDNQLRNLLLNNYERNLPSKRDTEDFISNFHQYRVKKKAQEKTHYGLLFACILVLTMIGSIVAKQTKNNLDIQTASGQVQK*
Ga0114973_1000009341	F047507	N/A	MLKEKNKLWNWKSKTISVGLALIVSWVACLKIGFELKKYNSITNLPNSCFVDSMIYASRCNLLLISSSDSWNSVYGFTFGYKDDKEAILGHAVCVFEYNNNLWMYDPNWGTSPVCKIGDRKRYKEKIRLYINKTYPIIVIEDFMLNDWTYVQKTKKNKMNKTYKEVSIHLDEDKKE*
Ga0114973_1000009352	F017268	N/A	VNLDITLLFNLILGALSFLGGWLFTRVFSLFDKQENLMKEINDKTFSDFITLRKEMESESRKHQQEISDLALKISTTYVTKESFDDYFDRIEAKLDRNFDIIQNHFNKNNKN*
Ga0114973_1000009382	F050171	N/A	MGMFNYIKVEQDLPINDELKALNIDFKKEEFQTKELEDNVMATYIIRDYRLFELKITSHWEDNPDYVKDGSRFGEFFNKNKLVEDSREEIFRDDYTGTFTFGTYVLGQDKESYDWFPDWKCVVVKGLLTEISLIKPIEKNSSGTRIELDEQFKKQLDDHERKMKCPVYSFYFKYYVKTMNLIEWKLDALIGRIIRLLDWLRWKGIRKLIRILTPR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10000093

Overview

Ecosystem & Geography

Associated Families

Sequences