Scaffold Ga0114973_10000384

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114973_10000384

Scaffold Ga0114973_10000384

Overview

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000384 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	33012
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077018	Metagenome	117	N
F093504	Metagenome	106	Y
F096880	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000038415	F096880	GGA	MITRNNADGSVTFIYESWDELVKSEPKWQPDADLAAKDRADERSWDY*
Ga0114973_1000038431	F093504	AGGA	MMNWIRKYAVAMSGDIWTYVGLLIAYFTLDGSAKKITGILILGGLLIWLVTLPIRETDD*
Ga0114973_100003849	F077018	AGAAG	MVKTIVGVEVFSDPVGQRIKALLMNYAMEHYDSTPEQLEPGIDQTHLIVGFTRQAIIDSLMAEVEVMTFRNVNSTEHQIPTLFIAGVLHAVDVAGGKGSIIGKGE*

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