Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000491 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10000491 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29888
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (85.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29888

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (85.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y
F060898	Metagenome / Metatranscriptome	132	N
F090403	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000049110	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGIDLDVTEEDAGTQAKTFEDVQRQALGINASGDDIVSLQGSFAEQAGFGIGAGLGYIEE*
Ga0114973_1000049125	F090403	AGGCGG	MTFNAQYTLETGAAKKRKREEEVAYWNSLNGPVVIKSVKGDDDGE*
Ga0114973_100004913	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGLKNKADIVAALTEEGVTWSVYQKTIKDIEKAADEFSEDAEEILPRFNPDAQPENTLLVRMTRENYRYDILNYTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA*
Ga0114973_100004914	F058150	N/A	MEILVGSNSPVTHKVFWQGQLTDSDSLPVVRLYDITEDPAISPPINPGTILATLTAVKSEVDAGTYVVYIPVSYTTRQRQLRLSWSYTVGSVSTEKNHKIYVQTPYTDLSQAIDSLGLGSDFSDPNSKSYFELCSAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLLNTLTNVNNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPTNDVWNGVFKQGVTYRVQGKFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQLLLPYVINKMVVI*
Ga0114973_100004915	F056615	N/A	MYDLVDSVMPMFLDVYRQFDLQDPDTGSIKKEWQFDRTVPCSAKGIISNSSSSRTGDRQVMSNKYTNDQILQIRTSEKITLREKITNIRDSEGTVIWEELNFPTNTPTVFELMGTTPMTDPLGGVLGYNSTVKRSENQTIG*
Ga0114973_100004916	F035307	GGA	LDNSSLLVTAASGLQKGMAGTKGTVLRDSTVAQISAAIYYHAQVVSKLTTNKQFQKKFQSVIFKQIEEDFGLYVDSQSRMNPKSLHHVYEWKKTGNKNSRLFKLKVLSTDGLSFKITSSFLPSKSAVPNQFGKRRHVFINKASVMEAGIPLVIRPKFAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNTAIKRSGFQQLFNSSLTKAMRVPSDVRKVKYSFNANTLNMNAESAIASAFGGAV*
Ga0114973_100004917	F000258	GGAGG	MTDYKADIMLDLRKYLWSELKANNIFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSIDVSDINEVRNLMTDLFRRMDDSARDANAYSGISKKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHLGLTGRFA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10000491

Overview

Ecosystem & Geography

Associated Families

Sequences