Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000513 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10000513 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29321
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (78.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29321

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (78.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F007964	Metagenome / Metatranscriptome	341	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F050167	Metagenome / Metatranscriptome	145	N
F057118	Metagenome / Metatranscriptome	136	Y
F093272	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000051312	F009064	N/A	MIIELNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGRLEPEINANIRANVCEWAVAKHYNLAWNNPWYPNALHKKRYPLPDVGENLEVRSIRTQDSIAFWGKDKEKVIVGTKCLDLEYFSKVEIFGVAYPEEFMKPEYYDKYINGWRIPIDGFTHE*
Ga0114973_1000051315	F008808	AGG	MDNKVPPCPECGEQFDNVFQATDHLLEDDEEFDPSLILPNGSRLMIGSLLRCLYKYAERPEQVKVITQSAYMTLFTAETQPEAIKDIVEEMIIKSQMMEIDDEIKQLLEGGE*
Ga0114973_1000051324	F057118	AGAAGG	MNLTNYKITIKTTATLVYHISEYDIDRAIELAIDAPYREWEVSEFDAPTGADVIAEEV*
Ga0114973_1000051328	F050167	AGG	MSTTTTQVEDYLASISLTLADLANELATVQFDVASVNGYEPKGTILKALPTQTRFKPKSVWVSLGNGKYKHLTGEKGLIAKHSRLEGYTSVVFRP*
Ga0114973_1000051332	F093272	N/A	VKGEIVPYNPYGVSGSIITPPRDVRSAPAWLGSRSKRFSNLVVRDKSGNIIVAVEDSVAVKLARRTIKNAKPKPLPATLRPLTELELRNMKAQERLEVMAKLLARPADNYL*
Ga0114973_1000051342	F007964	GGAGG	MANAYTASNGNLAGTAGGAGLVQKAYDRLLDFALRSEPLIRSVADKRPAKLA
Ga0114973_100005136	F001094	AGGA	MNTDKLKAIAITYVRAAVAAVTALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10000513

Overview

Ecosystem & Geography

Associated Families

Sequences