Basic Information | |
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Taxon OID | 3300009068 Open in IMG/M |
Scaffold ID | Ga0114973_10000814 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 23366 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (73.68%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006261 | Metagenome / Metatranscriptome | 377 | Y |
F008607 | Metagenome | 330 | Y |
F019308 | Metagenome | 230 | N |
F036203 | Metagenome | 170 | Y |
F057363 | Metagenome / Metatranscriptome | 136 | Y |
F096619 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114973_1000081410 | F006261 | GAGG | MATISSGYTSSSPILVNNPLSWSFVAPDDDDIKVVGVSVQQPLSQTIVEAYGVFKPLGASKSVVVAQSIYGIDGTYEITVQGEDDWDELYPVLVYQGTLLVRDPLARLKYVRFVDRNWVESGNIDSLIRVVKVTYFEVDAP* |
Ga0114973_1000081420 | F036203 | GAG | MAETQQPMSSNDAGNVTGSSSKVQRVHGVSDAQGVNPKINQDDFFKDLDSLVGSGRGQSGCSIGKLVADLDEPLRSKLNEIMRNEKVNSSRLGEVMLAYGLQVSSSDVLRRHRRRLIGKDGCKCPNES* |
Ga0114973_1000081422 | F019308 | N/A | MAKSSFTLDLFGDQELVNALKAGAEDTPQAIAQAIYEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGNTGYFVDIFYGGPAASYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIQKGHRN* |
Ga0114973_1000081423 | F008607 | AGG | MDAIYTKVAEFLTDSVVFTAKASVDKYNKPTFSGDTTVTGRLIYGQTKSKDVQGQEVVDIGRFITNGPAATITVGHKMVVGADTFTINAIDKIKDENGAHHAVIRFGR* |
Ga0114973_1000081434 | F096619 | AGGAG | MAINHAIVSVGSTATLLTVAASGGGKDGSTILIQNPAGGQAVFLGGAGVTSSSYGYKLAIDSNISIELNQDEAVYGVVASSTQSVAVLRQGV* |
Ga0114973_100008147 | F057363 | AGGAG | MDSKIKAMLASYGRSFLAAVTTAFMITGGDILALDGDALKAILAAGVSAVLPVAIRAANPKDPAFGKIADGVTEAVVKKIKAKKK* |
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