NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10001269

Scaffold Ga0114973_10001269


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10001269 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18970
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (67.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026563Metagenome197Y
F047670Metagenome149Y
F050978Metagenome144Y
F051079Metagenome144N
F056555Metagenome / Metatranscriptome137Y
F096869Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_1000126922F050978N/AMDAVDYVRLDCDAGQALAYKHQLDLDGLIVNQDYIWRYQKPVYDEFAWTDSEVSNVTFTFKNPSLATFYQLKWSR*
Ga0114973_1000126925F051079AGGAMNDWDRSNLHFILDSDEATLEDFYSWATEDDLAYALSLVREARTELLVQEAEILDELLTDATADDVSEANTMLKQFQL*
Ga0114973_1000126926F026563GGAMDESVELHCTQDEDTGEWLVWFPHPLGGMNVLETFSNEAEAREFWQEQMDSANFKE*
Ga0114973_1000126934F047670AGGAGMREEYFWLALLVVVIAAGPLLSIWALNTLFPVLAIPYTLETWAAMALVGGVFQGLRIGKKA*
Ga0114973_100012696F056555AGGAGMNLKVKAAGIMAGIFAGTIAVQGVMVLAAEKFGPQAVLNTFVGGILVFLIYQMYTLILANLESKEAIKEMSKKY*
Ga0114973_100012697F096869AGGAMMQDFYFEKTRNNVDDDWPESFTLDDLAKALNVERVSYRIYYSRDNLTLRLFVFRAYCTPAEMETMTSMGFVFAQDGDTENIPDKPVEEEIKE*
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