Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10001461 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10001461 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17669
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (65.12%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

17669

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (65.12%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F012854	Metagenome / Metatranscriptome	276	Y
F014955	Metagenome	258	Y
F016143	Metagenome	249	Y
F017107	Metagenome	242	Y
F017287	Metagenome	241	Y
F027399	Metagenome	194	Y
F029048	Metagenome / Metatranscriptome	189	Y
F046243	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100014611	F012854	N/A	ALIKLYPQIVTLTGDVATDANGNEVAYDLAAVTTQAQADAQTVIDTKASALAKLAALGLTEDEIKALL*
Ga0114973_1000146111	F017287	N/A	MDIRRVFEGEAPCDKCDQAQDCKEYEWACRAFSFYVLHGRFEEYTVRHPTRGMFNKIFKEDDKALKNYLKSVKSKEEMGIHDLFEE*
Ga0114973_1000146114	F029048	AGGAG	MLSHIKDVIKDKATISTEPFGVDEERQLISFEVNDLAAIIRDVIQTCADCCLNTTDRDSILELLN*
Ga0114973_1000146118	F006255	GGA	MGELNQLMLEHEEFLESSLDDMEYGGELTQEQVDCIRQACGKPKSKPNALLTEMFTDFGNIFGGNHA*
Ga0114973_100014612	F027399	N/A	MNFTFTWILDKFGFQPKIEITPKPVVKKPAAKKPAAKKTVRKKS*
Ga0114973_1000146121	F014955	AGG	MGKMDIERYIVAATGLGYLVVGFAQYFKGSPSNAFIWLGYAAAQIGLWMNLK*
Ga0114973_1000146124	F017107	N/A	MNDYSENYLRIQKLLKCYHNATLKNQYEKATRIAHDLADETIKLEFATYEQIRKQWLS*
Ga0114973_1000146134	F046243	AGGA	MKHMTRSYPPENAMLRPHKESTLEKQQKKRQDHNPPLELDDSGILNKKANQRMKRKEALSKAMNKYHDPDIVG*
Ga0114973_100014617	F016143	GGAG	MDNDYIYTPVGTDITVRWKLAGWVAPSEQQEYLNKWKYYQELPLRKLDDNARKEYEMVMKKAKVMRIR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10001461

Overview

Ecosystem & Geography

Associated Families

Sequences