NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10004558

Scaffold Ga0114973_10004558


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10004558 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9587
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003965Metagenome / Metatranscriptome459Y
F012455Metagenome / Metatranscriptome280Y
F014142Metagenome / Metatranscriptome265Y
F017133Metagenome / Metatranscriptome242Y
F056558Metagenome / Metatranscriptome137Y
F093845Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100045581F012455GGAMLKEIKNKVIRIQELRRSNAATPITNKKKYTRKVKHKNKLQ*
Ga0114973_1000455810F014142AGGMISLNEITVVAEPTHPMSSSNTKNNNIFRLANGNYISRMAYVYMVASENLISHKYLSPNESKWVFANKVGN*
Ga0114973_1000455812F093845AGGAGMKVTLTSTSGATKEMSFDTKEHLLEFITLYKATLHQGQAVCIDAPLVGIHSGWIQGTKV*
Ga0114973_1000455813F056558N/AMDIMGILDNLENAWDPEFQFESTPIFDKDNMGREIFWNDLGRPENDGLALKMFKEECCDNCTCSTNA*
Ga0114973_100045588F017133GAGMSIWTKFATVNDYPKGLMNLCPCGQVVLAPAMYHEGFPWWENPNKCKELFEGVTK*
Ga0114973_100045589F003965AGGTGGMTTLEITKCVEHTPNKSAISEYADTQFTFCESCENNIERWYNDTDPERLPMWTEWKVSK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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