NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10004605

Scaffold Ga0114973_10004605


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10004605 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9538
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019829Metagenome227Y
F061848Metagenome131N
F067738Metagenome125N
F072334Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_1000460510F061848N/AMASLAYAYDAYNAPSALPVTPPVTVSLAPRAPSTTTTAAPLTDCQYALQIAQQAGWPLTEMGTVARIIYRESGCKANAFNAKDSNGGSYGYYQINGYWCRPNKYWPIGWLQAQGILQTCNDLFDPMINTNSAIAIWHNSGYGPWALPNP*
Ga0114973_1000460511F019829N/AMTEYPIPDPGLTERTRQMYTEKYAETFKHFVDEVFRPNFIPAPKPVDHSILLDELAILREKYLNGTPSDEHKFAAAVITAAMAVIIGI*
Ga0114973_1000460513F072334N/AMTEKVETPDTQLQKVTLLIAMHDYSPDDLNAGDWLLNVLMACAEQKNTAYYGAKEIAKVMQILSVQNCEVVVSNGL*
Ga0114973_100046057F067738N/AMQALWVALVAGGFTVLVAIINRADKTSRKEHAETYKALGRIEQKIDGHVTNHEKF*
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Institute for Fundamental Biomedical Research
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