NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10004963

Scaffold Ga0114973_10004963


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10004963 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9143
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012753Metagenome / Metatranscriptome277Y
F024038Metagenome207Y
F034484Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_1000496310F012753N/AMAAEQDMECNTLTTPQENELAMLTHSIIEWRRLKEENDTRKIQVREANTKMKALEDIIVRVMKSHNIGALDLKNSGGRVLFKKQKRQAGLGQKTMERLIAEHLESQEKAQHLMNYIKEHREVVTKESIHYEKTDS*
Ga0114973_1000496313F034484N/AMSFPYSLAITVVVIAIIAGLIVNLMYFTPKYNRVDEGFFGGVARGAGHPDCLRTLPEGSELLDLLSQRGVDGISPGVSDASADYKELQLILSKLGCLKKDLMSPSGIVEATRYQAFETAHDRMNVAEVCAMCLSQAIPSRDLDIIFATWRDRGRVLLRKLCTEASLSEQEVIHAEKLFKSAWDDVYSISTSRCLKTDFSKQHGGETSGGDVSPYFPENLKDRRCYNNTYNGLSASGWNGAV*
Ga0114973_100049639F024038AGGAMTLEEEAHTILYELWFSVAETIFHRVCAITELTEEQMQALQSVALRPNDFQIQVDHAK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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