NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10006233

Scaffold Ga0114973_10006233


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10006233 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8049
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Associated Families12

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002778Metagenome / Metatranscriptome530N
F003786Metagenome / Metatranscriptome468N
F009808Metagenome312N
F019647Metagenome / Metatranscriptome228N
F035763Metagenome / Metatranscriptome171N
F038230Metagenome166N
F041020Metagenome / Metatranscriptome160Y
F045094Metagenome / Metatranscriptome153N
F051874Metagenome / Metatranscriptome143Y
F054865Metagenome / Metatranscriptome139N
F080903Metagenome / Metatranscriptome114Y
F090393Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100062331F035763N/ASRQAYHDFISNDPVFKREKISDKKEKAEPSETYLCFSAFASTYERLAGVTYPSDKGNFIMTAKDGANCKKLVTWLKKVSASEQAADEMVTMFTTAAWKISDKWLKANFTISNIYSQANNIYTKFMYNNPAAQEKRRQEEIDRLVNEYQP*
Ga0114973_1000623311F090393N/AMALDRKTSCRVSFYDYEQEQIQSWSITGSARLALLVNTISHEKNKIETNKDEFQSSLDYLIYDLKKFLNTPYTPEENA*
Ga0114973_1000623313F002778N/AVKEYNAQMMEIKAFCDEVNAWITTAPSGEDLDSCDEYLRQLSAYYSRYTVISGMNESIYSQLLMICIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSENYRTLLSSFRQERILVGHMTT*
Ga0114973_1000623314F080903N/AMYNTLLERQAYDAKDDIKFVIDNLIAEIHELEEALEKLENKIEELEEIIEGLKAEWHDLKNK*
Ga0114973_1000623317F054865N/AMVLMEVKTNRFIIKYKEGIVSVAANNVTEAIERFKELRIETSTKEITIVPANEMYKRREEIFGK*
Ga0114973_1000623318F009808N/AMKKNFNNQNFEWLFQDITSSMPKIIFTGIIFTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSDKRSKYPPRVAAVATVIALLELWFSIQGKSIGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRKRNPPKSKESALKMNATTSQPIKFTMAICFMFVVYVLPAQKNHFMAYNYMSIEKIGGDKLERTFYDTNEEQHYIDTITTDFLTSWNFWDGYSRSHLDNDLFMTYGTQTMKYIKSKQLWYYRGRYYDYKNLLKFLVKYSKKNFVNKKIQW*
Ga0114973_100062333F041020N/AMKQTPKQKAKELFDHYYIIIQNVGGELGNEILVSILAEQCALFFAMQMQQEKWDEKKYKDHEYWDEVEVEIVNIGMYAM*
Ga0114973_100062334F038230GGAMQCKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMSREQRQKYIEYQRSYHKLKQFTNEQFNPVPTTQL*
Ga0114973_100062335F003786N/AMYGIDGDLAFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEIAALRYNVQMEERGRLEREKLYAEFPTMIKEFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRQLWEEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK*
Ga0114973_100062336F051874N/AMTTLQLIEQKIEISLQAINNLLPEGYYTTNTISSTDFGNSGYILVKKVDAIDYVVDICKIRISDHYATNRGRQDTEIMIDLVRFNIEQLISLVDRKINPSNYEQIEIRTLTNDILESNFGIGKKPFTTLSEPTFLGEITTKKGNIAHKYSWLKEDVRYSWIKKAN*
Ga0114973_100062337F045094N/AMDDYKIKGTTEEDVDKAINRIFRFELLDDAQQVLFVEIMNEALDVPWIAEQLTGIWDRYNQEIYDCQKEDSYENH*
Ga0114973_100062338F019647AGAAGMKITKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQAITLIDDNGKYKVLEESQTMPAPTRVAVIEQQIAEKPDLAAIVFEMSAIYTQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR*
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