Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10007043 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10007043 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7511
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

7511

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (86.96%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049582	Metagenome / Metatranscriptome	146	Y
F053831	Metagenome / Metatranscriptome	140	N
F060634	Metagenome	132	N
F062703	Metagenome / Metatranscriptome	130	N
F063331	Metagenome / Metatranscriptome	129	Y
F066729	Metagenome / Metatranscriptome	126	N
F074804	Metagenome / Metatranscriptome	119	Y
F080943	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000704312	F053831	GAG	MNHWQKLEYRGDGFQPFSIRLDYCHEDIAFRDMYAFDDDEEYITKTEKEIEEGYRYFVILRAKVYLAGVEVGSHSLGGLLFDSTEQMESMMKLDFEGIISEAVVNAKHNLRQMSEAMNGVTV*
Ga0114973_1000704313	F063331	GGAG	MTELDHFALLNDLKSVLDLIDNDELETARTELKDVIDRVQADCDEKHRIYLERVERYLGHVDSALEDKK*
Ga0114973_1000704314	F062703	GGAGG	MLKKKIDNSNKTGIMVAYIDPSQNVVAVEPGWNMTPVVLAKLLKDLYPNKQDAIELVDSAVLVPVFRKEDYEYLDGFGGVLESNLNFYEHNLRPHIGHLFCHMTGVWKYSDDGIYWDPISEVFKDNSGFHFSEVRDAVEAA*
Ga0114973_1000704316	F060634	N/A	MIDFIVGFFAVMVFLAFYAYIGYWFLDLKTLPAEHWVSRSVTQIRIFFNDILEPMKWKTRRLDIRILLMLDKLVIRLTNTDYLLLLKKLWAGLVIVYLKTVLFALKLKRLFFEKNENKG*
Ga0114973_1000704322	F080943	AGGAG	MITEATKERLRELEGQKITLEDELERLSYTNNFVRIAHIEQELFDVKDSIKKITQNHWFEDISREELQKEESTLQ*
Ga0114973_100070433	F049582	GGAGG	MFEDHKEIHQVLADRFGNEDDLTISMMRRAISDLGIENPEALDVIYESVMFYTGDWPESEGWGSSDSAICVRSVKESLISNGYLKAVA*
Ga0114973_100070435	F066729	GGAGG	MTIKVPNNSLWQYIERDHIDSNIKKTIWEEFVLSHQDEFAERVSELAQEMWSNYNTGAE*
Ga0114973_100070436	F074804	GGAG	MIDDRLSDQRDEFFLDIQKGDLVFLQADDGSEIAGIAQERSIMGWMLEGGVEVTEYDNYLGHVSRNQLTGIAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10007043

Overview

Ecosystem & Geography

Associated Families

Sequences