NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10009611

Scaffold Ga0114973_10009611


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10009611 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6318
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F011393Metagenome / Metatranscriptome291Y
F013298Metagenome / Metatranscriptome272Y
F017485Metagenome240Y
F027416Metagenome194N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_1000961111F000785N/AMRVTNKTGMKFDCKRLMRFAEEKLGVSKCTAIAFTWESGEDSMGWYDWDETIWINLAQCKRMITVQKTILHEWTHAQQTFRWYNHYNLKYGYKNNPYEIEARENEKLVKRAYKKSK*
Ga0114973_1000961112F011393N/AMPKGEQIANNRCEHCNIQLHTNESGEYYPVINRMDKQTLIRGEYIPIGNTFQYPKNWGKRKGAMILLETRIEDKRKQLIEAEIELAKLSACLEQVKEWDPNTLY*
Ga0114973_1000961113F013298N/AMNIILNPLNNPNMNIREFYVKNYPSDDMGDGINPNATFDGLWEIINKYGLIKDVYDYLYVYDTLIRERVFEKLAANKGCEYDVIYYQWLKNTAL*
Ga0114973_100096114F027416N/AMLTIENIQKLKGLKVGANGKVWKILRTNQMDFNSENIYSIVLRTYPDNIHRIHLYLDRELKDGDYHIHSSKSNIKIAVERQDMVDVYNFLRLIKKEIERAVC*
Ga0114973_100096116F017485N/AMNNELKTKDILEGITFILMIVATIGMFCLLYEVKELRELTKGVSNLQTIRK*
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Institute for Fundamental Biomedical Research
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