Scaffold Ga0114973_10016857

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114973_10016857

Scaffold Ga0114973_10016857

Overview

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10016857 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4598
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F010821	Metagenome	298	Y
F030055	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1001685710	F010821	AGGAGG	MTDFTFSPTDFNATTILVVANTPDAKQYLAERYGFGCVSVEIRKSAAPEFADSFEFQGLSYA*
Ga0114973_100168578	F005737	N/A	MFEIEKYTKPTDWAQVALYVVSVVAIIVVILDVFIWRP*
Ga0114973_100168579	F030055	N/A	MIDQGLEHLVIEHGDMAVPFDCYFCPVTGNLWHCYLGTTDISGVMSATAIAELEREFAPKSLYESADYV*

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